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Researchers from the Universities of Konstanz (Germany), Leeds (U.K.) and Stanford (U.S.) have discovered that the nascent polypeptide-associated complex (NAC) prevents the aggregation of proteins associated with several neurodegenerative diseases. The study, “Dual role of ribosome-binding domain of NAC as a potent suppressor of protein aggregation and aging-related proteinopathies,” is published in the journal Molecular Cell

Numerous devastating neurodegenerative disorders in humans, such as Huntington’s and Alzheimer’s disease, as well as a disease known as spinocerebellar ataxia, are linked to specific cellular proteins that accumulate in cells. The proteins form damaging plaques and cause the progressive dysfunction and death of neuronal cells in the brain.

The key molecular chaperone NAC is a protein complex found in all eukaryotic organisms, and is required for healthy cellular activity. NAC is known to bind to ribosomes within the cell to facilitate the production of new proteins, and is only now being understood for its additional role in preventing cellular degeneration, through its effects beyond the ribosome.

Elke Deuerling at the University of Konstanz, one of the lead authors on the study, says, “What is so fascinating about this is that NAC can recognise different types of aggregation-prone proteins and prevent them from aggregating. NAC is a very abundant cellular protein and seems to be involved in many processes that maintain cell fitness, health and functionality. We believe it to be one of the most important chaperones in the cell.”

NAC is present in all eukaryotes, and was first described over 25 years ago. Its precise functions, however, which are vital to the survival of organisms, have remained largely unstudied for a long time. The current paper is the first to demonstrate conclusively that NAC exerts chaperone activity off the ribosome toward structurally diverse substrates including polyglutamine (PolyQ)-containing proteins and Amyloid-β 40 (Aβ40) peptides. Importantly, NAC suppresses PolyQ aggregation and enhances the organismal fitness in vivo, as tests with the animal model system C. elegans conducted by the University of Konstanz team led by Drs Martin Gamerdinger and Elke Deuerling, assisted by their co-workers Karina Gense, Nadine Sachs and Renate Schlömer, show.

PolyQ analyses of neuronal mice cells carried out by Professor Judith Frydman at Stanford University and her team, including one of the first authors, Dr. Koning Shen, assisted by Rebecca Chan, revealed that a reduction of NAC caused catastrophic damage within cells producing toxic PolyQ proteins, providing further evidence of the crucial role NAC plays with regard to suppressing protein aggregation.

The international research team identified the positively charged ribosome-binding N-βNAC subunit (N-βNAC), which is merely 40 amino acids long, as the crucial NAC domain responsible for exerting chaperone activity off the ribosome. The Stanford team demonstrated that a small peptide within this sequence can successfully prevent aggregation of disease-linked polyglutamine-expanded proteins, including Huntingtin, causing Huntington’s disease, and Ataxin-3, causing a form of ataxia. “This came as a huge surprise,” says Martin Gamerdinger. “What this implies is that N-βNAC effectively fulfills a dual role: It is responsible for binding NAC to the ribosome and, off the ribosome, for inhibiting protein aggregation of PolyQ proteins.”

A key step in the discovery of the role of NAC was to find out how it recognises and binds the damaging proteins, and prevents them from aggregating. An important contribution was made by Professor Sheena Radford and her team, including Esther Martin, Antonio Calabrese, Patrick Knight and Katie Stewart, in the Astbury Centre for Structural Molecular Biology at the University of Leeds, where Sheena Radford is Director.

The Leeds team chemically linked NAC to two proteins it helps to protect from forming toxic aggregations in the cell, Ataxin-3 and Amyloid-β 40, which are associated with spinocerebellar ataxia and Alzheimer’s disease, respectively. Mass spectrometry experiments were then used to find out which precise parts of the chaperone and proteins were linked together. The results were clear cut and surprising. “We found that one specific region of the NAC chaperone binds Ataxin-3 and when added in isolation is sufficient to inhibit PolyQ aggregation,” says Professor Sheena Radford. “However, looking at Amyloid-β 40, we found that there is at least one more chaperone domain within NAC that we have yet to uncover. We can clearly see the effects that this domain has—it completely suppresses protein aggregation in both cases. But we have not been able to identify this second binding site for Amyloid-β 40 yet.”

One future task for the researchers will be to identify these unknown NAC substrate interaction domains. Another will be to further develop the results of the study for medical application. “Being able to clearly identify one important chaperone domain within NAC has huge implications for the development of therapeutic approaches to help combat neurodegenerative disorders,” Professor Judith Frydman stresses. “Increasing the concentration of NAC in cells to suppress protein aggregation isn’t universally beneficial. But being able to work with the small NAC fragment N-βNAC—or with even smaller peptides only 20 amino acids long that we managed to identify within N-βNAC—could be a game changer. We may not be able to cure diseases such as Huntington’s or Alzheimer’s any time soon, but we may be able to delay their progress.”

Source: https://phys.org/news/2019-04-protein-complex-neurodegenerative-diseases.html

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